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Source code for torch.sparse

# The Tensor classes are added to this module by python_tensor.cpp
from typing import Optional, Tuple, List, Union, Any

import torch
from torch._C import _add_docstr, _sparse  # type: ignore[attr-defined]
from torch import Tensor

# Semi structured sparsity support
from .semi_structured import (
    SparseSemiStructuredTensor,
    SparseSemiStructuredTensorCUSPARSELT,
    SparseSemiStructuredTensorCUTLASS,
    to_sparse_semi_structured
)

# A workaround to support both TorchScript and MyPy:
from typing import TYPE_CHECKING
if TYPE_CHECKING:
    from torch.types import _dtype as DType
    DimOrDims = Optional[Union[int, Tuple[int], List[int]]]
else:
    # The JIT doesn't understand Union, nor torch.dtype here
    DType = int
    DimOrDims = Optional[Tuple[int]]


__all__ = [
    'addmm',
    'check_sparse_tensor_invariants',
    'mm',
    'sum',
    'softmax',
    'log_softmax',
    'SparseSemiStructuredTensor',
    'SparseSemiStructuredTensorCUTLASS',
    'SparseSemiStructuredTensorCUSPARSELT',
    'to_sparse_semi_structured',
    'as_sparse_gradcheck',
]

addmm = _add_docstr(_sparse._sparse_addmm, r"""
sparse.addmm(mat, mat1, mat2, *, beta=1., alpha=1.) -> Tensor

This function does exact same thing as :func:`torch.addmm` in the forward,
except that it supports backward for sparse COO matrix :attr:`mat1`.
When :attr:`mat1` is a COO tensor it must have `sparse_dim = 2`.
When inputs are COO tensors, this function also supports backward for both inputs.

Supports both CSR and COO storage formats.

.. note::
    This function doesn't support computing derivaties with respect to CSR matrices.

Args:
    mat (Tensor): a dense matrix to be added
    mat1 (Tensor): a sparse matrix to be multiplied
    mat2 (Tensor): a dense matrix to be multiplied
    beta (Number, optional): multiplier for :attr:`mat` (:math:`\beta`)
    alpha (Number, optional): multiplier for :math:`mat1 @ mat2` (:math:`\alpha`)
""")


mm = _add_docstr(_sparse._sparse_mm, r"""
    Performs a matrix multiplication of the sparse matrix :attr:`mat1`
    and the (sparse or strided) matrix :attr:`mat2`. Similar to :func:`torch.mm`, if :attr:`mat1` is a
    :math:`(n \times m)` tensor, :attr:`mat2` is a :math:`(m \times p)` tensor, out will be a
    :math:`(n \times p)` tensor.
    When :attr:`mat1` is a COO tensor it must have `sparse_dim = 2`.
    When inputs are COO tensors, this function also supports backward for both inputs.

    Supports both CSR and COO storage formats.

.. note::
    This function doesn't support computing derivaties with respect to CSR matrices.

    This function also additionally accepts an optional :attr:`reduce` argument that allows
    specification of an optional reduction operation, mathematically performs the following operation:

.. math::

    z_{ij} = \bigoplus_{k = 0}^{K - 1} x_{ik} y_{kj}

where :math:`\bigoplus` defines the reduce operator. :attr:`reduce` is implemented only for
CSR storage format on CPU device.

Args:
    mat1 (Tensor): the first sparse matrix to be multiplied
    mat2 (Tensor): the second matrix to be multiplied, which could be sparse or dense
    reduce (str, optional): the reduction operation to apply for non-unique indices
        (:obj:`"sum"`, :obj:`"mean"`, :obj:`"amax"`, :obj:`"amin"`). Default :obj:`"sum"`.

Shape:
    The format of the output tensor of this function follows:
    - sparse x sparse -> sparse
    - sparse x dense -> dense

Example::

    >>> a = torch.tensor([[1., 0, 2], [0, 3, 0]]).to_sparse().requires_grad_()
    >>> a
    tensor(indices=tensor([[0, 0, 1],
                           [0, 2, 1]]),
           values=tensor([1., 2., 3.]),
           size=(2, 3), nnz=3, layout=torch.sparse_coo, requires_grad=True)
    >>> b = torch.tensor([[0, 1.], [2, 0], [0, 0]], requires_grad=True)
    >>> b
    tensor([[0., 1.],
            [2., 0.],
            [0., 0.]], requires_grad=True)
    >>> y = torch.sparse.mm(a, b)
    >>> y
    tensor([[0., 1.],
            [6., 0.]], grad_fn=<SparseAddmmBackward0>)
    >>> y.sum().backward()
    >>> a.grad
    tensor(indices=tensor([[0, 0, 1],
                           [0, 2, 1]]),
           values=tensor([1., 0., 2.]),
           size=(2, 3), nnz=3, layout=torch.sparse_coo)
    >>> c = a.detach().to_sparse_csr()
    >>> c
    tensor(crow_indices=tensor([0, 2, 3]),
           col_indices=tensor([0, 2, 1]),
           values=tensor([1., 2., 3.]), size=(2, 3), nnz=3,
           layout=torch.sparse_csr)
    >>> y1 = torch.sparse.mm(c, b, 'sum')
    >>> y1
    tensor([[0., 1.],
            [6., 0.]], grad_fn=<SparseMmReduceImplBackward0>)
    >>> y2 = torch.sparse.mm(c, b, 'max')
    >>> y2
    tensor([[0., 1.],
            [6., 0.]], grad_fn=<SparseMmReduceImplBackward0>)
""")


sampled_addmm = _add_docstr(_sparse.sparse_sampled_addmm, r"""
sparse.sampled_addmm(input, mat1, mat2, *, beta=1., alpha=1., out=None) -> Tensor

Performs a matrix multiplication of the dense matrices :attr:`mat1` and :attr:`mat2` at the locations
specified by the sparsity pattern of :attr:`input`. The matrix :attr:`input` is added to the final result.

Mathematically this performs the following operation:

.. math::

    \text{out} = \alpha\ (\text{mat1} \mathbin{@} \text{mat2})*\text{spy}(\text{input}) + \beta\ \text{input}

where :math:`\text{spy}(\text{input})` is the sparsity pattern matrix of :attr:`input`, :attr:`alpha`
and :attr:`beta` are the scaling factors.
:math:`\text{spy}(\text{input})` has value 1 at the positions where :attr:`input` has non-zero values, and 0 elsewhere.

.. note::
    :attr:`input` must be a sparse CSR tensor. :attr:`mat1` and :attr:`mat2` must be dense tensors.

Args:
    input (Tensor): a sparse CSR matrix of shape `(m, n)` to be added and used to compute
        the sampled matrix multiplication
    mat1 (Tensor): a dense matrix of shape `(m, k)` to be multiplied
    mat2 (Tensor): a dense matrix of shape `(k, n)` to be multiplied

Keyword args:
    beta (Number, optional): multiplier for :attr:`input` (:math:`\beta`)
    alpha (Number, optional): multiplier for :math:`mat1 @ mat2` (:math:`\alpha`)
    out (Tensor, optional): output tensor. Ignored if `None`. Default: `None`.

Examples::

    >>> input = torch.eye(3, device='cuda').to_sparse_csr()
    >>> mat1 = torch.randn(3, 5, device='cuda')
    >>> mat2 = torch.randn(5, 3, device='cuda')
    >>> torch.sparse.sampled_addmm(input, mat1, mat2)
    tensor(crow_indices=tensor([0, 1, 2, 3]),
        col_indices=tensor([0, 1, 2]),
        values=tensor([ 0.2847, -0.7805, -0.1900]), device='cuda:0',
        size=(3, 3), nnz=3, layout=torch.sparse_csr)
    >>> torch.sparse.sampled_addmm(input, mat1, mat2).to_dense()
    tensor([[ 0.2847,  0.0000,  0.0000],
        [ 0.0000, -0.7805,  0.0000],
        [ 0.0000,  0.0000, -0.1900]], device='cuda:0')
    >>> torch.sparse.sampled_addmm(input, mat1, mat2, beta=0.5, alpha=0.5)
    tensor(crow_indices=tensor([0, 1, 2, 3]),
        col_indices=tensor([0, 1, 2]),
        values=tensor([ 0.1423, -0.3903, -0.0950]), device='cuda:0',
        size=(3, 3), nnz=3, layout=torch.sparse_csr)
""")

[docs]def sum(input: Tensor, dim: DimOrDims = None, dtype: Optional[DType] = None) -> Tensor: r"""Return the sum of each row of the given sparse tensor. Returns the sum of each row of the sparse tensor :attr:`input` in the given dimensions :attr:`dim`. If :attr:`dim` is a list of dimensions, reduce over all of them. When sum over all ``sparse_dim``, this method returns a dense tensor instead of a sparse tensor. All summed :attr:`dim` are squeezed (see :func:`torch.squeeze`), resulting an output tensor having :attr:`dim` fewer dimensions than :attr:`input`. During backward, only gradients at ``nnz`` locations of :attr:`input` will propagate back. Note that the gradients of :attr:`input` is coalesced. Args: input (Tensor): the input sparse tensor dim (int or tuple of ints): a dimension or a list of dimensions to reduce. Default: reduce over all dims. dtype (:class:`torch.dtype`, optional): the desired data type of returned Tensor. Default: dtype of :attr:`input`. Example:: >>> nnz = 3 >>> dims = [5, 5, 2, 3] >>> I = torch.cat([torch.randint(0, dims[0], size=(nnz,)), torch.randint(0, dims[1], size=(nnz,))], 0).reshape(2, nnz) >>> V = torch.randn(nnz, dims[2], dims[3]) >>> size = torch.Size(dims) >>> # xdoctest: +IGNORE_WANT("non-deterministic") >>> S = torch.sparse_coo_tensor(I, V, size) >>> S tensor(indices=tensor([[2, 0, 3], [2, 4, 1]]), values=tensor([[[-0.6438, -1.6467, 1.4004], [ 0.3411, 0.0918, -0.2312]], [[ 0.5348, 0.0634, -2.0494], [-0.7125, -1.0646, 2.1844]], [[ 0.1276, 0.1874, -0.6334], [-1.9682, -0.5340, 0.7483]]]), size=(5, 5, 2, 3), nnz=3, layout=torch.sparse_coo) # when sum over only part of sparse_dims, return a sparse tensor >>> torch.sparse.sum(S, [1, 3]) tensor(indices=tensor([[0, 2, 3]]), values=tensor([[-1.4512, 0.4073], [-0.8901, 0.2017], [-0.3183, -1.7539]]), size=(5, 2), nnz=3, layout=torch.sparse_coo) # when sum over all sparse dim, return a dense tensor # with summed dims squeezed >>> torch.sparse.sum(S, [0, 1, 3]) tensor([-2.6596, -1.1450]) """ if dtype is None: if dim is not None: return torch._sparse_sum(input, dim) else: return torch._sparse_sum(input) else: if dim is not None: return torch._sparse_sum(input, dim, dtype=dtype) else: return torch._sparse_sum(input, dtype=dtype)
softmax = _add_docstr(_sparse._sparse_softmax, r""" sparse.softmax(input, dim, *, dtype=None) -> Tensor Applies a softmax function. Softmax is defined as: :math:`\text{Softmax}(x_{i}) = \frac{exp(x_i)}{\sum_j exp(x_j)}` where :math:`i, j` run over sparse tensor indices and unspecified entries are ignores. This is equivalent to defining unspecified entries as negative infinity so that :math:`exp(x_k) = 0` when the entry with index :math:`k` has not specified. It is applied to all slices along `dim`, and will re-scale them so that the elements lie in the range `[0, 1]` and sum to 1. Args: input (Tensor): input dim (int): A dimension along which softmax will be computed. dtype (:class:`torch.dtype`, optional): the desired data type of returned tensor. If specified, the input tensor is casted to :attr:`dtype` before the operation is performed. This is useful for preventing data type overflows. Default: None """) log_softmax = _add_docstr(_sparse._sparse_log_softmax, r""" sparse.log_softmax(input, dim, *, dtype=None) -> Tensor Applies a softmax function followed by logarithm. See :class:`~torch.sparse.softmax` for more details. Args: input (Tensor): input dim (int): A dimension along which softmax will be computed. dtype (:class:`torch.dtype`, optional): the desired data type of returned tensor. If specified, the input tensor is casted to :attr:`dtype` before the operation is performed. This is useful for preventing data type overflows. Default: None """) spdiags = _add_docstr( _sparse._spdiags, r""" sparse.spdiags(diagonals, offsets, shape, layout=None) -> Tensor Creates a sparse 2D tensor by placing the values from rows of :attr:`diagonals` along specified diagonals of the output The :attr:`offsets` tensor controls which diagonals are set. - If :attr:`offsets[i]` = 0, it is the main diagonal - If :attr:`offsets[i]` < 0, it is below the main diagonal - If :attr:`offsets[i]` > 0, it is above the main diagonal The number of rows in :attr:`diagonals` must match the length of :attr:`offsets`, and an offset may not be repeated. Args: diagonals (Tensor): Matrix storing diagonals row-wise offsets (Tensor): The diagonals to be set, stored as a vector shape (2-tuple of ints): The desired shape of the result Keyword args: layout (:class:`torch.layout`, optional): The desired layout of the returned tensor. ``torch.sparse_coo``, ``torch.sparse_csc`` and ``torch.sparse_csr`` are supported. Default: ``torch.sparse_coo`` Examples: Set the main and first two lower diagonals of a matrix:: >>> diags = torch.arange(9).reshape(3, 3) >>> diags tensor([[0, 1, 2], [3, 4, 5], [6, 7, 8]]) >>> s = torch.sparse.spdiags(diags, torch.tensor([0, -1, -2]), (3, 3)) >>> s tensor(indices=tensor([[0, 1, 2, 1, 2, 2], [0, 1, 2, 0, 1, 0]]), values=tensor([0, 1, 2, 3, 4, 6]), size=(3, 3), nnz=6, layout=torch.sparse_coo) >>> s.to_dense() tensor([[0, 0, 0], [3, 1, 0], [6, 4, 2]]) Change the output layout:: >>> diags = torch.arange(9).reshape(3, 3) >>> diags tensor([[0, 1, 2],[3, 4, 5], [6, 7, 8]) >>> s = torch.sparse.spdiags(diags, torch.tensor([0, -1, -2]), (3, 3), layout=torch.sparse_csr) >>> s tensor(crow_indices=tensor([0, 1, 3, 6]), col_indices=tensor([0, 0, 1, 0, 1, 2]), values=tensor([0, 3, 1, 6, 4, 2]), size=(3, 3), nnz=6, layout=torch.sparse_csr) >>> s.to_dense() tensor([[0, 0, 0], [3, 1, 0], [6, 4, 2]]) Set partial diagonals of a large output:: >>> diags = torch.tensor([[1, 2], [3, 4]]) >>> offsets = torch.tensor([0, -1]) >>> torch.sparse.spdiags(diags, offsets, (5, 5)).to_dense() tensor([[1, 0, 0, 0, 0], [3, 2, 0, 0, 0], [0, 4, 0, 0, 0], [0, 0, 0, 0, 0], [0, 0, 0, 0, 0]]) .. note:: When setting the values along a given diagonal the index into the diagonal and the index into the row of :attr:`diagonals` is taken as the column index in the output. This has the effect that when setting a diagonal with a positive offset `k` the first value along that diagonal will be the value in position `k` of the row of :attr:`diagonals` Specifying a positive offset:: >>> diags = torch.tensor([[1, 2, 3], [1, 2, 3], [1, 2, 3]]) >>> torch.sparse.spdiags(diags, torch.tensor([0, 1, 2]), (5, 5)).to_dense() tensor([[1, 2, 3, 0, 0], [0, 2, 3, 0, 0], [0, 0, 3, 0, 0], [0, 0, 0, 0, 0], [0, 0, 0, 0, 0]]) """)
[docs]class check_sparse_tensor_invariants: """A tool to control checking sparse tensor invariants. The following options exists to manage sparsr tensor invariants checking in sparse tensor construction: 1. Using a context manager: .. code:: python with torch.sparse.check_sparse_tensor_invariants(): run_my_model() 2. Using a procedural approach: .. code:: python prev_checks_enabled = torch.sparse.check_sparse_tensor_invariants.is_enabled() torch.sparse.check_sparse_tensor_invariants.enable() run_my_model() if not prev_checks_enabled: torch.sparse.check_sparse_tensor_invariants.disable() 3. Using function decoration: .. code:: python @torch.sparse.check_sparse_tensor_invariants() def run_my_model(): ... run_my_model() 4. Using ``check_invariants`` keyword argument in sparse tensor constructor call. For example: >>> torch.sparse_csr_tensor([0, 1, 3], [0, 1], [1, 2], check_invariants=True) Traceback (most recent call last): File "<stdin>", line 1, in <module> RuntimeError: `crow_indices[..., -1] == nnz` is not satisfied. """
[docs] @staticmethod def is_enabled(): r"""Return True if the sparse tensor invariants checking is enabled. .. note:: Use :func:`torch.sparse.check_sparse_tensor_invariants.enable` or :func:`torch.sparse.check_sparse_tensor_invariants.disable` to manage the state of the sparse tensor invariants checks. """ return torch._C._check_sparse_tensor_invariants()
[docs] @staticmethod def enable(): r"""Enable sparse tensor invariants checking in sparse tensor constructors. .. note:: By default, the sparse tensor invariants checks are disabled. Use :func:`torch.sparse.check_sparse_tensor_invariants.is_enabled` to retrieve the current state of sparse tensor invariants checking. .. note:: The sparse tensor invariants check flag is effective to all sparse tensor constructors, both in Python and ATen. The flag can be locally overridden by the ``check_invariants`` optional argument of the sparse tensor constructor functions. """ torch._C._set_check_sparse_tensor_invariants(True)
[docs] @staticmethod def disable(): r"""Disable sparse tensor invariants checking in sparse tensor constructors. See :func:`torch.sparse.check_sparse_tensor_invariants.enable` for more information. """ torch._C._set_check_sparse_tensor_invariants(False)
# context manager support def __init__(self, enable=True): self.state = enable self.saved_state : Optional[bool] = None def __enter__(self): if self.saved_state is not None: raise RuntimeError('This context manager instance is already activated.' ' Use a different context manager instance for context nesting.') self.saved_state = self.is_enabled() torch._C._set_check_sparse_tensor_invariants(self.state) def __exit__(self, type, value, traceback): assert self.saved_state is not None torch._C._set_check_sparse_tensor_invariants(self.saved_state) self.saved_state = None # decorator support def __call__(self, mth): def test_mth(*args, **kwargs): with type(self)(self.state): return mth(*args, **kwargs) return test_mth
[docs]def as_sparse_gradcheck(gradcheck): """Decorate function, to extend gradcheck for sparse tensors. Decorator for torch.autograd.gradcheck or its functools.partial variants that extends the gradcheck function with support to input functions that operate on or/and return sparse tensors. The specified gradcheck function itself is guaranteed to operate on strided tensors only. For example: >>> gradcheck = torch.sparse.as_sparse_gradcheck(torch.autograd.gradcheck) >>> x = torch.tensor([[0, 1], [2, 3]], dtype=torch.float64).to_sparse_coo().requires_grad_(True) >>> gradcheck(lambda x: x.to_sparse_csr(), x) True """ def gradcheck_with_sparse_support(func, inputs, **kwargs): """ Create gradcheck with support for sparse tensors. Same as :func:`torch.autograd.gradcheck` but with sparse tensors inputs and outputs support. """ masked = kwargs.pop('masked', False) sparse_layouts = {torch.sparse_coo, torch.sparse_csr, torch.sparse_csc, torch.sparse_bsr, torch.sparse_bsc} sparse_compressed_layouts = {torch.sparse_csr, torch.sparse_csc, torch.sparse_bsr, torch.sparse_bsc} sparse_block_layouts = {torch.sparse_bsr, torch.sparse_bsc} STRIDED_REPRESENTATION = '__STRIDED_REPRESENTATION__' def convert_to_strided_representation(args): """Convert differentiable non-strided tensors to a representation containing differentiable strided tensors.""" if not isinstance(args, (list, tuple)): args = args, new_args: List[Any] = [] for obj in args: if isinstance(obj, torch.Tensor) and obj.requires_grad and obj.layout in sparse_layouts: d = dict(layout=obj.layout, shape=obj.shape) if not masked: # Materialize unspecified elements with zero values batch_dim = obj.ndim - obj.dense_dim() - obj.sparse_dim() blocksize = obj.values().shape[batch_dim + 1:batch_dim + 3] if obj.layout in sparse_block_layouts else None full_mask = torch.ones(obj.shape, device=obj.device, dtype=torch.bool).to_sparse( layout=obj.layout, blocksize=blocksize, dense_dim=obj.dense_dim()) obj = obj.to_dense().sparse_mask(full_mask) if obj.layout is torch.sparse_coo: d.update(indices=obj._indices(), is_coalesced=obj.is_coalesced()) values = obj._values() elif obj.layout in {torch.sparse_csr, torch.sparse_bsr}: d.update(compressed_indices=obj.crow_indices(), plain_indices=obj.col_indices()) values = obj.values() else: d.update(compressed_indices=obj.ccol_indices(), plain_indices=obj.row_indices()) values = obj.values() new_args.extend((STRIDED_REPRESENTATION, d, values.requires_grad_(True))) else: new_args.append(obj) return tuple(new_args) def restore_from_strided_representation(args): """Restore non-strided differentiable tensosr from their strided representations.""" new_args = [] args = list(args) while args: a = args.pop(0) if a == STRIDED_REPRESENTATION: d, values = args.pop(0), args.pop(0) if d['layout'] is torch.sparse_coo: a = torch.sparse_coo_tensor(d['indices'], values, size=d['shape'], is_coalesced=d['is_coalesced']) elif d['layout'] in sparse_compressed_layouts: a = torch.sparse_compressed_tensor(d['compressed_indices'], d['plain_indices'], values, size=d['shape'], layout=d['layout']) else: raise NotImplementedError(f'conversion of {d["layout"]} strided representation to tensor') new_args.append(a) return tuple(new_args) def func_wrapper(*args, **kwargs): restored_args = restore_from_strided_representation(args) # convert differentiable output sparse tensors to strided # tensors: outputs = func(*restored_args, **kwargs) strided_outputs = tuple(outputs) if isinstance(outputs, (list, tuple)) else (outputs,) strided_outputs = tuple((o.to_dense(masked_grad=masked) if isinstance(o, torch.Tensor) and o.requires_grad and o.layout in sparse_layouts else o) for o in strided_outputs) return strided_outputs if isinstance(outputs, (list, tuple)) else strided_outputs[0] args = (func_wrapper, convert_to_strided_representation(inputs)) return gradcheck(*args, **kwargs) return gradcheck_with_sparse_support

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