"""MLflow logger and its helper handlers."""
import warnings
from typing import Any, Callable, List, Optional, Union
from torch.optim import Optimizer
from ignite.contrib.handlers.base_logger import BaseLogger, BaseOptimizerParamsHandler, BaseOutputHandler
from ignite.engine import Engine, Events
from ignite.handlers import global_step_from_engine
__all__ = ["MLflowLogger", "OutputHandler", "OptimizerParamsHandler", "global_step_from_engine"]
[docs]class MLflowLogger(BaseLogger):
"""
`MLflow <https://mlflow.org>`_ tracking client handler to log parameters and metrics during the training
and validation.
This class requires `mlflow package <https://github.com/mlflow/mlflow/>`_ to be installed:
.. code-block:: bash
pip install mlflow
Args:
tracking_uri: MLflow tracking uri. See MLflow docs for more details
Examples:
.. code-block:: python
from ignite.contrib.handlers.mlflow_logger import *
# Create a logger
mlflow_logger = MLflowLogger()
# Log experiment parameters:
mlflow_logger.log_params({
"seed": seed,
"batch_size": batch_size,
"model": model.__class__.__name__,
"pytorch version": torch.__version__,
"ignite version": ignite.__version__,
"cuda version": torch.version.cuda,
"device name": torch.cuda.get_device_name(0)
})
# Attach the logger to the trainer to log training loss at each iteration
mlflow_logger.attach_output_handler(
trainer,
event_name=Events.ITERATION_COMPLETED,
tag="training",
output_transform=lambda loss: {'loss': loss}
)
# Attach the logger to the evaluator on the training dataset and log NLL, Accuracy metrics after each epoch
# We setup `global_step_transform=global_step_from_engine(trainer)` to take the epoch
# of the `trainer` instead of `train_evaluator`.
mlflow_logger.attach_output_handler(
train_evaluator,
event_name=Events.EPOCH_COMPLETED,
tag="training",
metric_names=["nll", "accuracy"],
global_step_transform=global_step_from_engine(trainer),
)
# Attach the logger to the evaluator on the validation dataset and log NLL, Accuracy metrics after
# each epoch. We setup `global_step_transform=global_step_from_engine(trainer)` to take the epoch of the
# `trainer` instead of `evaluator`.
mlflow_logger.attach_output_handler(
evaluator,
event_name=Events.EPOCH_COMPLETED,
tag="validation",
metric_names=["nll", "accuracy"],
global_step_transform=global_step_from_engine(trainer)),
)
# Attach the logger to the trainer to log optimizer's parameters, e.g. learning rate at each iteration
mlflow_logger.attach_opt_params_handler(
trainer,
event_name=Events.ITERATION_STARTED,
optimizer=optimizer,
param_name='lr' # optional
)
"""
def __init__(self, tracking_uri: Optional[str] = None):
try:
import mlflow
except ImportError:
raise RuntimeError(
"This contrib module requires mlflow to be installed. "
"Please install it with command: \n pip install mlflow"
)
if tracking_uri is not None:
mlflow.set_tracking_uri(tracking_uri)
self.active_run = mlflow.active_run()
if self.active_run is None:
self.active_run = mlflow.start_run()
def __getattr__(self, attr: Any) -> Any:
import mlflow
return getattr(mlflow, attr)
def close(self) -> None:
import mlflow
mlflow.end_run()
def _create_output_handler(self, *args: Any, **kwargs: Any) -> "OutputHandler":
return OutputHandler(*args, **kwargs)
def _create_opt_params_handler(self, *args: Any, **kwargs: Any) -> "OptimizerParamsHandler":
return OptimizerParamsHandler(*args, **kwargs)
[docs]class OutputHandler(BaseOutputHandler):
"""Helper handler to log engine's output and/or metrics.
Args:
tag: common title for all produced plots. For example, 'training'
metric_names: list of metric names to plot or a string "all" to plot all available
metrics.
output_transform: output transform function to prepare `engine.state.output` as a number.
For example, `output_transform = lambda output: output`
This function can also return a dictionary, e.g `{'loss': loss1, 'another_loss': loss2}` to label the plot
with corresponding keys.
global_step_transform: global step transform function to output a desired global step.
Input of the function is `(engine, event_name)`. Output of function should be an integer.
Default is None, global_step based on attached engine. If provided,
uses function output as global_step. To setup global step from another engine, please use
:meth:`~ignite.contrib.handlers.mlflow_logger.global_step_from_engine`.
state_attributes: list of attributes of the ``trainer.state`` to plot.
Examples:
.. code-block:: python
from ignite.contrib.handlers.mlflow_logger import *
# Create a logger
mlflow_logger = MLflowLogger()
# Attach the logger to the evaluator on the validation dataset and log NLL, Accuracy metrics after
# each epoch. We setup `global_step_transform=global_step_from_engine(trainer)` to take the epoch
# of the `trainer`:
mlflow_logger.attach(
evaluator,
log_handler=OutputHandler(
tag="validation",
metric_names=["nll", "accuracy"],
global_step_transform=global_step_from_engine(trainer)
),
event_name=Events.EPOCH_COMPLETED
)
# or equivalently
mlflow_logger.attach_output_handler(
evaluator,
event_name=Events.EPOCH_COMPLETED,
tag="validation",
metric_names=["nll", "accuracy"],
global_step_transform=global_step_from_engine(trainer)
)
Another example, where model is evaluated every 500 iterations:
.. code-block:: python
from ignite.contrib.handlers.mlflow_logger import *
@trainer.on(Events.ITERATION_COMPLETED(every=500))
def evaluate(engine):
evaluator.run(validation_set, max_epochs=1)
mlflow_logger = MLflowLogger()
def global_step_transform(*args, **kwargs):
return trainer.state.iteration
# Attach the logger to the evaluator on the validation dataset and log NLL, Accuracy metrics after
# every 500 iterations. Since evaluator engine does not have access to the training iteration, we
# provide a global_step_transform to return the trainer.state.iteration for the global_step, each time
# evaluator metrics are plotted on MLflow.
mlflow_logger.attach_output_handler(
evaluator,
event_name=Events.EPOCH_COMPLETED,
tag="validation",
metrics=["nll", "accuracy"],
global_step_transform=global_step_transform
)
Another example where the State Attributes ``trainer.state.alpha`` and ``trainer.state.beta``
are also logged along with the NLL and Accuracy after each iteration:
.. code-block:: python
mlflow_logger.attach_output_handler(
trainer,
event_name=Events.ITERATION_COMPLETED,
tag="training",
metrics=["nll", "accuracy"],
state_attributes=["alpha", "beta"],
)
Example of `global_step_transform`:
.. code-block:: python
def global_step_transform(engine, event_name):
return engine.state.get_event_attrib_value(event_name)
.. versionchanged:: 0.4.7
accepts an optional list of `state_attributes`
"""
def __init__(
self,
tag: str,
metric_names: Optional[Union[str, List[str]]] = None,
output_transform: Optional[Callable] = None,
global_step_transform: Optional[Callable] = None,
state_attributes: Optional[List[str]] = None,
) -> None:
super(OutputHandler, self).__init__(
tag, metric_names, output_transform, global_step_transform, state_attributes
)
def __call__(self, engine: Engine, logger: MLflowLogger, event_name: Union[str, Events]) -> None:
if not isinstance(logger, MLflowLogger):
raise TypeError("Handler 'OutputHandler' works only with MLflowLogger")
rendered_metrics = self._setup_output_metrics_state_attrs(engine)
global_step = self.global_step_transform(engine, event_name) # type: ignore[misc]
if not isinstance(global_step, int):
raise TypeError(
f"global_step must be int, got {type(global_step)}."
" Please check the output of global_step_transform."
)
# Additionally recheck metric names as MLflow rejects non-valid names with MLflowException
from mlflow.utils.validation import _VALID_PARAM_AND_METRIC_NAMES
metrics = {}
for keys, value in rendered_metrics.items():
key = " ".join(keys)
metrics[key] = value
for key in list(metrics.keys()):
if not _VALID_PARAM_AND_METRIC_NAMES.match(key):
warnings.warn(
f"MLflowLogger output_handler encountered an invalid metric name '{key}' that "
"will be ignored and not logged to MLflow"
)
del metrics[key]
logger.log_metrics(metrics, step=global_step)
[docs]class OptimizerParamsHandler(BaseOptimizerParamsHandler):
"""Helper handler to log optimizer parameters
Args:
optimizer: torch optimizer or any object with attribute ``param_groups``
as a sequence.
param_name: parameter name
tag: common title for all produced plots. For example, 'generator'
Examples:
.. code-block:: python
from ignite.contrib.handlers.mlflow_logger import *
# Create a logger
mlflow_logger = MLflowLogger()
# Optionally, user can specify tracking_uri with corresponds to MLFLOW_TRACKING_URI
# mlflow_logger = MLflowLogger(tracking_uri="uri")
# Attach the logger to the trainer to log optimizer's parameters, e.g. learning rate at each iteration
mlflow_logger.attach(
trainer,
log_handler=OptimizerParamsHandler(optimizer),
event_name=Events.ITERATION_STARTED
)
# or equivalently
mlflow_logger.attach_opt_params_handler(
trainer,
event_name=Events.ITERATION_STARTED,
optimizer=optimizer
)
"""
def __init__(self, optimizer: Optimizer, param_name: str = "lr", tag: Optional[str] = None):
super(OptimizerParamsHandler, self).__init__(optimizer, param_name, tag)
def __call__(self, engine: Engine, logger: MLflowLogger, event_name: Union[str, Events]) -> None:
if not isinstance(logger, MLflowLogger):
raise TypeError("Handler OptimizerParamsHandler works only with MLflowLogger")
global_step = engine.state.get_event_attrib_value(event_name)
tag_prefix = f"{self.tag} " if self.tag else ""
params = {
f"{tag_prefix}{self.param_name} group_{i}": float(param_group[self.param_name])
for i, param_group in enumerate(self.optimizer.param_groups)
}
logger.log_metrics(params, step=global_step)